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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52392234_52412192_R

Intron Information:

Intron Rank:
144876
Intron Class:
major
Intron Phase:
Intron Coordinates:
52392234 - 52412192
Intron Length:
19959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TGTTTTTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
85.4
0.8
0.9
79.9
37.7
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
52
-0
1.8
60.52
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025326
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019807
52391503 - 52412367
20865