About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52392713_52412192_R

Intron Information:

Intron Rank:
144878
Intron Class:
major
Intron Phase:
Intron Coordinates:
52392713 - 52412192
Intron Length:
19480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TGTCTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
68.8
43.8
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
77.6
0.62
0.9
73.6
35.7
Minor 5ss
32.2
-2
3.1
40
46.1
Minor BPS
59.4
0.29
1.5
69.57
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025326
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045799
52392288 - 52426844
34557