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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52562981_52563210_R

Intron Information:

Intron Rank:
134078
Intron Class:
major
Intron Phase:
Intron Coordinates:
52562981 - 52563210
Intron Length:
230

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTCAT
U12 Branch Point Sequence:
TCTGAGGTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
76
0.65
1.1
77.4
37.3
Major PPT
88.7
0.87
0.6
88
21.8
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
41.6
-0.6
2.7
59.46
46.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019411
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039827
52549861 - 52563298
13438
ENSAPLT00000030077
52562850 - 52575449
12600
ENSAPLT00000025397
52550486 - 52574337
23852