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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52755352_52755641_F

Intron Information:

Intron Rank:
136726
Intron Class:
major
Intron Phase:
Intron Coordinates:
52755352 - 52755641
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
TTGTTTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
GCTTCATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
74.7
33.7
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.4
0.77
0.8
80.2
32
Minor 5ss
36.7
-1.5
3.4
48.8
42.8
Minor BPS
55.6
0.26
1.9
73.95
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023649
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034051
52755278 - 52756586
1309