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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52782786_52784993_R

Intron Information:

Intron Rank:
147343
Intron Class:
major
Intron Phase:
Intron Coordinates:
52782786 - 52784993
Intron Length:
2208

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTACT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TAAGATTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.4
33.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
83.7
0.76
0.8
80.6
31.4
Minor 5ss
37
-1.5
3.1
51.8
44.8
Minor BPS
57.3
0.31
1.6
70.78
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026606
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035322
52781579 - 52785699
4121