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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52797194_52798460_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52797194 - 52798460
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCGG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTCCAAGTAACT
Flanking Amino Acid:
AMPNKNKKEKEPAKSGKSGK
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
62.5
43.8
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
100
1.12
0.4
100
0
Minor 5ss
29.9
-2.3
2.8
32.6
35.8
Minor BPS
46.1
-0.2
2.4
71.75
44.5

Associated Gene:

Gene:
PPP2R5C
Ensembl Gene ID:
ENSAPLG00000015971
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034295
52796969 - 52875990
79022