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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52814254_52847554_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52814254 - 52847554
Intron Length:
33301

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
RELQKLPALKDVPPADQEKL
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
89.6
24.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
57.8
0.27
2.3
75.5
40.6
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
PPP2R5C
Ensembl Gene ID:
ENSAPLG00000015971
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034295
52796969 - 52875990
79022