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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52827202_52847554_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52827202 - 52847554
Intron Length:
20353

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TATTTTTTACTT
Flanking Amino Acid:
FQPLALLHIRDVPPADQEKL
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
63.1
43.4
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
91
0.92
0.7
89
27.5
Minor 5ss
32.8
-2
3
41.9
44.9
Minor BPS
65
0.55
1.5
80
36.6

Associated Gene:

Gene:
PPP2R5C
Ensembl Gene ID:
ENSAPLG00000015971
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016697
52827105 - 52875990
48886