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Intron Name: Anas_platyrhynchos_platyrhynchos_5_52860610_52862445_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52860610 - 52862445

Intron Length:

1836

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTTATTTTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTAAT

U12 Branch Point Sequence:

TTTTCTTTTATT

Flanking Amino Acid:

VKSLSVYHPQLAYCVVQFLE

Intron Amino Acid Position:

268

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

99.2

1.16

0.6

9.5

Major BPS

84.4

0.85

34.5

Major PPT

86.3

0.82

0.7

85.7

27.2

Minor 5ss

46.1

-0.4

2.8

66.9

44.4

Minor BPS

75.6

0.89

1.5

91.64

31.3

Associated Gene:

Gene:

PPP2R5C

Ensembl Gene ID:

ENSAPLG00000015971

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016697

52827105 - 52875990

48886

ENSAPLT00000034295

52796969 - 52875990

79022