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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52868449_52870471_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52868449 - 52870471
Intron Length:
2023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTGCTTTTAAAC
Flanking Amino Acid:
CTQQFKAEKLKEKLKLKERE
Intron Amino Acid Position:
419

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
96.3
1.04
0.5
95.7
14.9
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
62
0.36
1.4
68.43
37

Associated Gene:

Gene:
PPP2R5C
Ensembl Gene ID:
ENSAPLG00000015971
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034295
52796969 - 52875990
79022
ENSAPLT00000016697
52827105 - 52875990
48886