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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52883171_52885454_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52883171 - 52885454
Intron Length:
2284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TATTTCTTAACA
Flanking Amino Acid:
TVLVERSTLKEDVGDEGEEE
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
86.1
0.81
0.8
81.3
35.5
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
86.5
1.14
0.9
88.38
28

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641