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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52886278_52886735_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52886278 - 52886735
Intron Length:
458

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGCAA
5'SS Class:
major
3'SS Sequence:
TGTGCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTATCCAGAAAT
Flanking Amino Acid:
SYIRESGKADRDGDKMAPSV
Intron Amino Acid Position:
336

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
67.7
39
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
81
0.7
0.9
77.4
36.9
Minor 5ss
30.1
-2.3
3.2
38.5
46.5
Minor BPS
58.2
0.34
1.9
80.92
39.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641