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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52888540_52888649_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52888540 - 52888649
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCTCG
5'SS Class:
strong_major
3'SS Sequence:
AAACTTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATCCTTAAAC
Flanking Amino Acid:
MHVAYEEFEKVMVACFEVFQ
Intron Amino Acid Position:
575

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
65
41.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
70
0.45
0.9
67.1
39.3
Minor 5ss
51
0.04
2.3
65.3
46.1
Minor BPS
81.6
0.97
1.2
85.1
32.5

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641