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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52891252_52891751_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52891252 - 52891751
Intron Length:
500

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTACTTTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTTCCTCCAAT
Flanking Amino Acid:
PIWVNKLDMEIERILGVRLQ
Intron Amino Acid Position:
1070

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.9
78.8
38.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
72.5
0.51
0.8
65.6
35.8
Minor 5ss
42.4
-0.8
3.1
57.3
47.4
Minor BPS
59.9
0.39
2.1
85.81
40.1

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641