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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52891902_52892161_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52891902 - 52892161
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTTTCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAC
U12 Branch Point Sequence:
CTTGCAGTAAAA
Flanking Amino Acid:
HKPGGEPKIKNIVHELRITN
Intron Amino Acid Position:
1120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
74.9
0.62
1.1
77.4
37.4
Major PPT
79.6
0.67
0.9
73.5
36.4
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
44.7
-0.4
2.4
61.42
44.5

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641