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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52892309_52892442_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52892309 - 52892442
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TGCACTAGAAAT
Flanking Amino Acid:
LPRIQSQRYQVGVHYELSEE
Intron Amino Acid Position:
1169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
69.7
0.44
1
65.6
44.9
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
44.7
-0.3
1.8
60.95
42

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641