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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52892584_52892731_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52892584 - 52892731
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGC
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
ATATCTTTATTA
Flanking Amino Acid:
IVTEVEQYVKVWLQYQCLWD
Intron Amino Acid Position:
1216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
73.3
36.4
Major BPS
75.5
0.63
1
66
40.9
Major PPT
71.6
0.49
0.9
71.5
38.6
Minor 5ss
30.8
-2.2
3.3
41.8
45
Minor BPS
63.3
0.42
1.5
70.35
36.2

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641