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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52894471_52894810_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52894471 - 52894810
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAACT
5'SS Class:
major
3'SS Sequence:
TTCTTTACTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAC
U12 Branch Point Sequence:
TCATTCTTTACT
Flanking Amino Acid:
LLSGSEERVQVALEELQDLK
Intron Amino Acid Position:
1484

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
73.2
35.5
Major BPS
78.3
0.7
1
80
32.1
Major PPT
81.9
0.72
0.7
77.7
29.7
Minor 5ss
41.6
-0.9
3
58.8
45.4
Minor BPS
67.6
0.64
1.6
80.23
41.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641