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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52894925_52895608_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52894925 - 52895608
Intron Length:
684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAC
5'SS Class:
major
3'SS Sequence:
ATGTTACTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTTATGTTACT
Flanking Amino Acid:
QPWVSVQPRKLRQNLDGLLN
Intron Amino Acid Position:
1522

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
66.9
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.7
0.4
1.1
62.5
42.9
Minor 5ss
40.7
-1
2.8
52.9
44.2
Minor BPS
49
0
2.4
80.79
41

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641