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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52895720_52895799_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52895720 - 52895799
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TCTTCCAAGATG
Flanking Amino Acid:
VQRLLKGYMKINMLVIELKS
Intron Amino Acid Position:
1559

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.6
93.1
14.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
83.8
0.76
0.8
77.4
36.9
Minor 5ss
41.9
-0.9
2.9
57.8
46.8
Minor BPS
48.1
-0.2
2
59.01
43.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641