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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52896010_52896405_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52896010 - 52896405
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCTAGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
CATCCTTTATTT
Flanking Amino Acid:
EMALEEFLKQIREVWNTYEL
Intron Amino Acid Position:
1629

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
1.1
89.2
28.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
82.2
0.72
0.7
81.3
29.1
Minor 5ss
26.3
-2.7
3.6
37
40.2
Minor BPS
56.7
0.29
1.6
70.17
41.3

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641