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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52897777_52898513_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52897777 - 52898513
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATATGATTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATATGATT
Flanking Amino Acid:
YLERERSSFPRFYFVGDEDL
Intron Amino Acid Position:
1791

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
81.1
32.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62.8
0.29
1
60.8
44.1
Minor 5ss
35.6
-1.6
3.1
50.4
45.6
Minor BPS
56.1
0.27
1.8
80.8
34.8

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641