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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52898948_52899033_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52898948 - 52899033
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTGTA
5'SS Class:
major
3'SS Sequence:
TCTTTTCACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
CTTCTTTTCACA
Flanking Amino Acid:
VYISWIDKYQAQLVVLSAQI
Intron Amino Acid Position:
1910

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
74.1
36.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
80.7
0.69
0.8
76.6
31.1
Minor 5ss
47.9
-0.2
2.9
66.7
44.7
Minor BPS
54.9
0.15
1.8
67.58
39.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641