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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52899229_52899509_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52899229 - 52899509
Intron Length:
281

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TTGTTGTGATCT
Flanking Amino Acid:
PLRRRKLEHLITELVHQRDV
Intron Amino Acid Position:
1975

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.8
79.4
28.8
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
85.5
0.8
0.8
77.5
36.5
Minor 5ss
32.1
-2
3.1
36.8
41.9
Minor BPS
46.7
-0.1
2.3
72.01
45

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641