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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52899793_52900055_F

Intron Information:

Intron Rank:
27
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52899793 - 52900055
Intron Length:
263

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTTTG
5'SS Class:
major
3'SS Sequence:
ACTTCAAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACTGAA
U12 Branch Point Sequence:
CTCACTTCAAAA
Flanking Amino Acid:
LEARLGGSPFGPAGTGKTES
Intron Amino Acid Position:
2069

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
71.6
40.8
Major BPS
74.4
0.61
0.9
63.6
35.5
Major PPT
55
0.11
1
49.7
36.8
Minor 5ss
42.9
-0.8
3
54.6
44.9
Minor BPS
48.6
-0.1
1.7
57.3
42.1

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641