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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52900157_52901547_F

Intron Information:

Intron Rank:
28
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52900157 - 52901547
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTACGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACATCAA
U12 Branch Point Sequence:
CATCAATGAACT
Flanking Amino Acid:
FNCDETFDFQAMGRIFVGLC
Intron Amino Acid Position:
2103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
57.7
0.19
1.1
60
36
Major PPT
70.7
0.47
0.9
65.6
34.9
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
47.3
-0.1
1.9
66.53
42.9

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641