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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52901708_52902007_F

Intron Information:

Intron Rank:
29
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52901708 - 52902007
Intron Length:
300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTATGCTAC
5'SS Class:
weak_major
3'SS Sequence:
CGTCTCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TCACTTGTAACT
Flanking Amino Acid:
REHSNPNYDKTATPITCELL
Intron Amino Acid Position:
2156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.9
0.28
1.1
55.7
38.6
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
83.3
0.75
0.8
80.4
31.6
Minor 5ss
55.3
0.18
2.4
63.4
42.6
Minor BPS
49.7
0.06
2
69.23
42.1

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641