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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52902617_52903179_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52902617 - 52903179
Intron Length:
563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ATTTTCTCTACA
Flanking Amino Acid:
EIAENLPEQEILIQSVCETM
Intron Amino Acid Position:
2299

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
34.7
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
87
0.83
0.7
81.2
30.2
Minor 5ss
42
-0.9
2.9
59.3
45.1
Minor BPS
58.3
0.26
1.9
73.6
37.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641