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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52903782_52903904_F

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52903782 - 52903904
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTAATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTCTTTTAATT
Flanking Amino Acid:
TDGLFTHVLRKIIDNVRGEL
Intron Amino Acid Position:
2449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
80.7
33.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.8
0.76
0.8
77.6
34.4
Minor 5ss
36.4
-1.5
3.2
50.5
40
Minor BPS
77.3
0.94
1
88.63
29.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641