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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52905152_52905285_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52905152 - 52905285
Intron Length:
134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATA
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AATCAAGTAATA
Flanking Amino Acid:
QIDQLERYIQRYLVYAILWS
Intron Amino Acid Position:
2655

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
89.5
23.2
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
82.8
0.74
0.8
77.6
31.2
Minor 5ss
38.7
-1.3
2.9
50.9
45.5
Minor BPS
42.2
-0.5
2.2
55.06
37

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641