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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52905899_52906492_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52905899 - 52906492
Intron Length:
594

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACACAAG
5'SS Class:
major
3'SS Sequence:
TTGTCTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTCTCTTCACT
Flanking Amino Acid:
SALRALPDMEVVGLNFSSAT
Intron Amino Acid Position:
2780

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.5
0.48
1.1
62.3
43.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75.2
0.57
1
79.8
32.6
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
70.4
0.72
1.7
88.99
35.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641