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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52906700_52906793_F

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52906700 - 52906793
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGTTTT
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
GTACACTGATTT
Flanking Amino Acid:
TQRVISFIRQMVEHGGFYRT
Intron Amino Acid Position:
2849

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
81.7
32.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
88.9
0.88
0.7
81.2
36.5
Minor 5ss
48.6
-0.1
2.4
67.6
43.4
Minor BPS
45.3
-0.2
1.8
61.66
41.5

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641