About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52906916_52907275_F

Intron Information:

Intron Rank:
40
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52906916 - 52907275
Intron Length:
360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGTAC
5'SS Class:
strong_major
3'SS Sequence:
GCTAATCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ACTTTCTGGACT
Flanking Amino Acid:
TDPGRKPLSHRFLRHVPVVY
Intron Amino Acid Position:
2889

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
71.9
34
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
74.4
0.55
0.9
69.6
41.2
Minor 5ss
37.1
-1.5
3.3
49.8
46.8
Minor BPS
64.2
0.53
1.5
77.58
38.9

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641