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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52908136_52908893_F

Intron Information:

Intron Rank:
43
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52908136 - 52908893
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGAT
5'SS Class:
strong_major
3'SS Sequence:
CTGATTCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAC
U12 Branch Point Sequence:
TTAATCTTAACG
Flanking Amino Acid:
PILYSNWLSKDYIPVDQEEL
Intron Amino Acid Position:
3043

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
77
31.4
Major BPS
78.7
0.71
0.9
69.3
37.7
Major PPT
74.2
0.54
0.9
66
40.8
Minor 5ss
32.2
-2
3.5
47.2
48.2
Minor BPS
72.8
0.58
1.4
72.89
39.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641