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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52909407_52909523_F

Intron Information:

Intron Rank:
45
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52909407 - 52909523
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCATG
5'SS Class:
major
3'SS Sequence:
TAAATCTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ACATAAATAACA
Flanking Amino Acid:
MNGLSVYQIKVHRKYTGEDF
Intron Amino Acid Position:
3126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.3
64.8
46.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
75.7
0.58
1
66.2
44.6
Minor 5ss
38
-1.4
3.1
48.6
47.3
Minor BPS
46.2
-0.2
2
58.4
40.2

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641