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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52909686_52909761_F

Intron Information:

Intron Rank:
46
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52909686 - 52909761
Intron Length:
76

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
ATCTTTTGAATT
Flanking Amino Acid:
RMNTLLANGEVPGLFEGDEY
Intron Amino Acid Position:
3180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
69.8
0.45
1
71.1
38.8
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
61.7
0.45
1.4
74.22
37.3

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641