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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52909977_52910062_F

Intron Information:

Intron Rank:
47
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52909977 - 52910062
Intron Length:
86

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GAAGCCTTCACA
Flanking Amino Acid:
RAATSPALFNRCVLNWFGDW
Intron Amino Acid Position:
3251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
31.6
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.9
0.85
0.8
85.7
33.4
Minor 5ss
35.4
-1.7
3.2
50.9
45.5
Minor BPS
53.6
0.11
1.9
62.3
43.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641