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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52910268_52910406_F

Intron Information:

Intron Rank:
48
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52910268 - 52910406
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAA
U12 Branch Point Sequence:
TCTTCCCTAAAG
Flanking Amino Acid:
CVFVHQTLHQANARLAKRGG
Intron Amino Acid Position:
3320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
80.5
35
Major BPS
71.2
0.53
1
72.3
32.8
Major PPT
74.8
0.56
1
75.4
27.4
Minor 5ss
49.9
-0
2.4
66.4
45.1
Minor BPS
61.8
0.23
1.9
69.58
43.3

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641