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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52910581_52910675_F

Intron Information:

Intron Rank:
49
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52910581 - 52910675
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTATC
5'SS Class:
major
3'SS Sequence:
CTCTCTGTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAC
U12 Branch Point Sequence:
AGTTCTCCAATC
Flanking Amino Acid:
LRKIKETVDQVEELRRDLRI
Intron Amino Acid Position:
3378

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
78.3
36.2
Major BPS
72.7
0.56
0.9
63.4
35.2
Major PPT
73.5
0.53
0.8
72.3
32.3
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
49.2
-0
1.8
62.68
36.7

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641