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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52911383_52912023_F

Intron Information:

Intron Rank:
52
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
52911383 - 52912023
Intron Length:
641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTGC
5'SS Class:
major
3'SS Sequence:
ACTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
TGTCTCTAAAAA
Flanking Amino Acid:
TIVNFSAEEISDAIREKMKK
Intron Amino Acid Position:
3523

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.1
58.3
41.8
Major BPS
73
0.57
1
73.6
28.6
Major PPT
83.3
0.75
0.8
77.3
30.6
Minor 5ss
35.4
-1.7
3.5
50.3
46.3
Minor BPS
53.5
0.1
1.8
66.65
39.3

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641