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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52913321_52913877_F

Intron Information:

Intron Rank:
54
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52913321 - 52913877
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGACCT
5'SS Class:
strong_major
3'SS Sequence:
CACTTACTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
CTTCACTTACTT
Flanking Amino Acid:
KADLAAVEAKVNRSTALLKS
Intron Amino Acid Position:
3635

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
71.9
38
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
71.6
0.49
0.9
62.6
38.4
Minor 5ss
36.3
-1.6
3.2
50.3
39.7
Minor BPS
54.8
0.23
1.8
74.17
42.9

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641