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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52914091_52914204_F

Intron Information:

Intron Rank:
55
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52914091 - 52914204
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTCTAGTCAAAT
Flanking Amino Acid:
SHHLQQANIQFRTDIARTEY
Intron Amino Acid Position:
3706

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
86.3
0.82
0.8
80.9
31.1
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
42.6
-0.4
2.4
62.24
47.2

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641