Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_5291532_5293161_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5291532 - 5293161

Intron Length:

1630

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCCTTCCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTCAC

U12 Branch Point Sequence:

CTAAGCTAAACA

Flanking Amino Acid:

PIAHWHPLAEESSGGGCPAH

Intron Amino Acid Position:

466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.3

0.8

84.6

33.3

Major BPS

66.1

0.4

1.2

69.1

37.9

Major PPT

87.7

0.85

0.7

80.8

31.1

Minor 5ss

37.9

-1.4

3.3

56.5

47.6

Minor BPS

47.8

-0.1

2.1

60.6

45.2

Associated Gene:

Gene:

SYT9

Ensembl Gene ID:

ENSAPLG00000006733

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022743

5290961 - 5324554

33594