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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52916009_52916209_F

Intron Information:

Intron Rank:
59
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
52916009 - 52916209
Intron Length:
201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGCTTA
5'SS Class:
weak_major
3'SS Sequence:
TCTTCTAATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTTCTAATT
Flanking Amino Acid:
EKRSDLLKLQGEFQLRLRQL
Intron Amino Acid Position:
3899

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
67.6
40.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
68.5
0.42
1.1
73
35.4
Minor 5ss
60.8
0.37
2.3
64.2
47.3
Minor BPS
61.7
0.44
1.6
81.49
34

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641