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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52918337_52918914_F

Intron Information:

Intron Rank:
64
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52918337 - 52918914
Intron Length:
578

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
GGTTTCTTACCT
Flanking Amino Acid:
PYLWTEEKPATPIGQAIHRL
Intron Amino Acid Position:
4144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
83
23.8
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
86.3
0.82
0.7
84.1
23.8
Minor 5ss
41.2
-1
2.8
49.4
41.3
Minor BPS
67.7
0.63
1.6
81.13
40.4

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641