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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52919076_52919354_F

Intron Information:

Intron Rank:
65
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
52919076 - 52919354
Intron Length:
279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCTGC
5'SS Class:
major
3'SS Sequence:
TACTGTACAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTATCTTTAAAT
Flanking Amino Acid:
LDLTHIVDTEVKPNTPVLMC
Intron Amino Acid Position:
4198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
66
40.9
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
61.1
0.25
1
56
38.6
Minor 5ss
44.3
-0.6
2.8
59.8
44.8
Minor BPS
73.6
0.82
1.3
83.21
37.2

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641