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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52919467_52919547_F

Intron Information:

Intron Rank:
66
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
52919467 - 52919547
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAG
U12 Branch Point Sequence:
GTTTAAGCAACC
Flanking Amino Acid:
QNTQITSIAIGSAEGFNQAD
Intron Amino Acid Position:
4235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83.4
27.8
Major BPS
72.5
0.56
1.5
71.7
44.6
Major PPT
82.7
0.74
0.7
81.2
30.9
Minor 5ss
33.8
-1.9
2.9
41.4
44.7
Minor BPS
42.7
-0.5
2.4
62.1
42.5

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641