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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52919609_52919992_F

Intron Information:

Intron Rank:
67
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
52919609 - 52919992
Intron Length:
384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
AAAAATTTCATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTTTGTTTAAAA
Flanking Amino Acid:
KAINTAVKSGRWVMLKNVHL
Intron Amino Acid Position:
4255

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
21.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
58.4
0.19
1
50.7
42.5
Minor 5ss
42.8
-0.8
2.8
59.5
45
Minor BPS
66.9
0.53
1.8
80.33
35.6

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641