Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52920117_52920456_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

52920117 - 52920456

Intron Length:

340

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCTG

5'SS Class:

major

3'SS Sequence:

TTTTCTCTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTGAA

U12 Branch Point Sequence:

TTGGGCTTACCT

Flanking Amino Acid:

LFLTMEINPKVPVNLLRAGR

Intron Amino Acid Position:

4297

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.66

66.2

44.9

Major BPS

64.3

0.35

1.2

55.4

Major PPT

88.2

0.86

0.6

81.7

30.3

Minor 5ss

34.4

-1.8

3.4

47.3

48.1

Minor BPS

0.14

2.2

75.11

47.7

Associated Gene:

Gene:

DYNC1H1

Ensembl Gene ID:

ENSAPLG00000013977

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014811

52882426 - 52926066

43641