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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_52921428_52921623_F

Intron Information:

Intron Rank:
71
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
52921428 - 52921623
Intron Length:
196

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATCTTTT
5'SS Class:
weak_major
3'SS Sequence:
TTCTGACTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
AATACCAAAATT
Flanking Amino Acid:
HKDIQMPDGIRREEFVQWVE
Intron Amino Acid Position:
4464

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1.1
80.5
35
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
79.5
0.66
0.9
70
40.5
Minor 5ss
77.1
0.91
1.7
84.6
33.2
Minor BPS
49
0
1.9
69.61
41

Associated Gene:

Gene:
DYNC1H1
Ensembl Gene ID:
ENSAPLG00000013977
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014811
52882426 - 52926066
43641